/Shell/Bash/Bash add chr to beginning of vcf

Bash add chr to beginning of vcf

# Example usage:
awk '{if($0 !~ /^#/) print "chr"$0; else print $0}' input.vcf
# This converts a vcf file with numeric genome coordinates to one with 
# chr in front of the chromosome number. 

# Note, this command does the opposite operation, if needed:
awk '{gsub(/^chr/,""); print}' input.vcf

Source: biostars.org

Similar codes

0 vote165 views1 answer
# Check failed: allocator->SetPermissions(reinterpret_cast<void*>(region.begin()), region.size(), PageAllocator::kNoAccess).
Shell/Bash
1 vote162 views1 answer
Fish unset
Shell/Bash
0 vote185 views1 answer
How to install wintricks
Shell/Bash
31 votes218 views6 answers
Apt uninstall
Shell/Bash
0 vote159 views1 answer
WSL2 git init
Shell/Bash
0 vote175 views1 answer
How to add geth to environment variables
Shell/Bash
1 vote174 views2 answers
Install discord bot on server
Shell/Bash
8 votes165 views3 answers
Docker setup
Shell/Bash
0 vote164 views1 answer
Tree include files
Shell/Bash
-1 vote181 views6 answers
Linux commands list
Shell/Bash