Python pattern matching

Matching a pattern in python

pattern = "F-x-([EK])-x-S-([GT])-R-T"
pattern=pattern.replace("-","")
pattern=pattern.replace("x","[GPAVLIMCFYWHKRQNEDST]")
count=0

for sequence in source:
    count += 1
    sequence=sequence.replace(" ","")
    result = re.finditer(pattern, sequence)
    print(">sequence ",count)
    print(sequence)
    for match in result:
        print("found ",match.group()," at position",match.span()," third position =", match.group(2))

Source: bpc.biobix.be

Similar codes

0 vote73 views1 answer
How to remove first row of numpy array
Python
0 vote70 views1 answer
Tranking de perosnas python
Python
1 vote83 views1 answer
Pandas change dtype to timestamp
Python
0 vote79 views1 answer
Prettify json in pycharm
Python
0 vote66 views1 answer
How to log errors while debug is false in django
Python
0 vote72 views1 answer
Python x,y,z is d (20, 30, False)
Python
12 votes82 views2 answers
Vscode not recognizing python import
Python
0 vote71 views1 answer
Python search resultset from finadall
Python
3 votes80 views3 answers
Run flask in debug mode
Python
1 vote80 views2 answers
Querydict instance is immutable
Python