Samtools convert sam to bam

# Basic syntax:
samtools view -S -b sam_file.sam > bam_file.bam
# Where:
#	-S specifies that the input is a sam file
#	-b specified that the output should be written in bam format

# To convert a bam file to a sam file, use:
samtools view -h -o sam_file.sam bam_file.bam

Source: quinlanlab.org

Convert bam to sam samtools

samtools view -h -o yourDir/test.sam test.bam

Source: biostars.org

Similar codes

0 vote170 views1 answer
Supertest npm
Shell/Bash
1 vote158 views1 answer
Conda linux
Shell/Bash
48 votes183 views6 answers
Conda install sklearn
Shell/Bash
4 votes174 views3 answers
Ubuntu login as root
Shell/Bash
0 vote209 views1 answer
Windows launch from command line .lnk
Shell/Bash
1 vote171 views1 answer
Bash delete a range of lines from a file
Shell/Bash
0 vote165 views1 answer
Crontab is not running my shell script
Shell/Bash
0 vote177 views1 answer
Ssh key to ppk linux
Shell/Bash
0 vote209 views1 answer
Hxselect examples
Shell/Bash
0 vote228 views1 answer
Regex all not numbers
Shell/Bash