Samtools convert sam to bam

# Basic syntax:
samtools view -S -b sam_file.sam > bam_file.bam
# Where:
#	-S specifies that the input is a sam file
#	-b specified that the output should be written in bam format

# To convert a bam file to a sam file, use:
samtools view -h -o sam_file.sam bam_file.bam

Source: quinlanlab.org

Convert bam to sam samtools

samtools view -h -o yourDir/test.sam test.bam

Source: biostars.org

Similar codes

1 vote284 views1 answer
Linux kernel type cli command
Shell/Bash
1 vote313 views1 answer
Script to kill a process in windows
Shell/Bash
1 vote280 views1 answer
Dpkg: error processing package gitweb (--configure): installed gitweb package post-instal
Shell/Bash
0 vote283 views1 answer
Seach only in name apt
Shell/Bash
1 vote267 views1 answer
Internet speed test on raspberry pi
Shell/Bash
0 vote296 views1 answer
Bash print nth line
Shell/Bash
0 vote293 views1 answer
Aws ssh warning unprotected private key file
Shell/Bash
1 vote285 views1 answer
Bashrc autocomplete case insensitive
Shell/Bash
0 vote332 views1 answer
Bitbake availables images
Shell/Bash
0 vote288 views1 answer
Pip install txt
Shell/Bash