Samtools convert sam to bam

# Basic syntax:
samtools view -S -b sam_file.sam > bam_file.bam
# Where:
#	-S specifies that the input is a sam file
#	-b specified that the output should be written in bam format

# To convert a bam file to a sam file, use:
samtools view -h -o sam_file.sam bam_file.bam

Source: quinlanlab.org

Convert bam to sam samtools

samtools view -h -o yourDir/test.sam test.bam

Source: biostars.org

Similar codes

46 votes209 views6 answers
Install requests python
Shell/Bash
0 vote198 views1 answer
Uninstall all unnecessary node mudu,.es
Shell/Bash
0 vote187 views1 answer
How to clean pod in react native
Shell/Bash
4 votes205 views1 answer
Jango.core.exceptions.ImproperlyConfigured: Error loading MySQLdb module
Shell/Bash
0 vote183 views1 answer
Bash in terminal
Shell/Bash
6 votes202 views2 answers
Install babel command line
Shell/Bash
3 votes191 views1 answer
If argument supplied bash
Shell/Bash
1 vote189 views1 answer
How to overwrite file linux cli
Shell/Bash
0 vote204 views1 answer
Delete all view options mac os
Shell/Bash
0 vote222 views1 answer
Conemu git bash
Shell/Bash