Samtools convert sam to bam

# Basic syntax:
samtools view -S -b sam_file.sam > bam_file.bam
# Where:
#	-S specifies that the input is a sam file
#	-b specified that the output should be written in bam format

# To convert a bam file to a sam file, use:
samtools view -h -o sam_file.sam bam_file.bam

Source: quinlanlab.org

Convert bam to sam samtools

samtools view -h -o yourDir/test.sam test.bam

Source: biostars.org

Similar codes

0 vote242 views1 answer
PDF Acrobat ubunut
Shell/Bash
0 vote306 views1 answer
Copy file from ssh server to local
Shell/Bash
4 votes251 views1 answer
Copy all files from a folder to another ubuntu
Shell/Bash
1 vote252 views1 answer
Intall prettier vscode
Shell/Bash
0 vote278 views2 answers
Build-essential ubuntu install
Shell/Bash
0 vote253 views1 answer
Error installed react native using npx react native init
Shell/Bash
0 vote264 views1 answer
Installing mutillidae in kali
Shell/Bash
18 votes261 views6 answers
Check disk space linux
Shell/Bash
3 votes243 views1 answer
Install godot ubuntu
Shell/Bash
0 vote273 views1 answer
Adb kill server kali linux
Shell/Bash