Fsl flirt

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain \
 -interp nearestneighbour \
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm

Fsl flirt

#!/bin/sh

# Some viewers (like MRIcron) do not handle anisotropic voxels well. 
# FSL can easily convert an image with anisotropic voxels into one 
# with isotropic voxels in the same space using -applyisoxfm

# reslice current image into 1mm isotropic
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 1 -out anat_CT_axial_1mm

# reslice current image into 0.5 mm isotropic voxels.
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 0.5 -out anat_CT_axial_0.5mm

Similar codes

2 votes353 views1 answer
Install py launcher failed backend
Shell/Bash
0 vote312 views1 answer
Installer laravel avec docker
Shell/Bash
2 votes272 views2 answers
Linux command tail
Shell/Bash
0 vote324 views1 answer
Install tesseract 5 ubuntu
Shell/Bash
0 vote365 views1 answer
Conda install Moviepy
Shell/Bash
4 votes327 views2 answers
Delete a deployment in kubernetes
Shell/Bash
0 vote330 views1 answer
Running modprobe bridge br_netfilter failed with message: ip: can't find device
Shell/Bash
0 vote331 views1 answer
Delete docker logs linux
Shell/Bash
1 vote325 views2 answers
How to check the Redis version?
Shell/Bash
0 vote340 views1 answer
Environment variables not showing in process.env in create react app in js
Shell/Bash