Fsl flirt

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain \
 -interp nearestneighbour \
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm

Fsl flirt

#!/bin/sh

# Some viewers (like MRIcron) do not handle anisotropic voxels well. 
# FSL can easily convert an image with anisotropic voxels into one 
# with isotropic voxels in the same space using -applyisoxfm

# reslice current image into 1mm isotropic
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 1 -out anat_CT_axial_1mm

# reslice current image into 0.5 mm isotropic voxels.
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 0.5 -out anat_CT_axial_0.5mm

Similar codes

1 vote381 views1 answer
Install twilio
Shell/Bash
0 vote366 views3 answers
Package 'docker-ce' is not installed, so not removed
Shell/Bash
0 vote370 views2 answers
Git change commit message for merge
Shell/Bash
0 vote381 views1 answer
Slow internet wifi speed on ubuntu 18.04
Shell/Bash
0 vote338 views1 answer
604.c
Shell/Bash
0 vote355 views1 answer
Failed to open stream: No space left on device linode
Shell/Bash
5 votes389 views2 answers
Git add identity
Shell/Bash
9 votes350 views2 answers
How to pull from a particular branch in git
Shell/Bash
2 votes359 views2 answers
Vscode get list of installed extensions
Shell/Bash
0 vote345 views1 answer
Install figlet package and run a simple command
Shell/Bash