/Shell/Bash/Bcftools extract information

Bcftools extract information

# Example usage:
bcftools query --format '%CHROM\t%POS\t%INFO/END\t[%GT]\n' input_file.vcf
# Where:
#	- Fixed columns like CHROM and POS are referred to as %COLUMN
#	- Info fields need to be specified as %INFO/TAG
#	- Format fields need to be enclosed in brackets
#	- The tab \t and new line \n characters are used to format the output

Source: samtools.github.io

Similar codes

18 votes276 views1 answer
Installing java on linux
Shell/Bash
8 votes311 views6 answers
Zsh: command not found: npm
Shell/Bash
0 vote302 views1 answer
How to remove v4l2loopback
Shell/Bash
0 vote267 views1 answer
Ubuntu drag and drop to desktop
Shell/Bash
0 vote317 views1 answer
Ubuntu dock not showing
Shell/Bash
0 vote283 views2 answers
Git save staged changes to file
Shell/Bash
0 vote342 views1 answer
Find what is running on port 8000
Shell/Bash
-1 vote297 views1 answer
Update docker-compose ubuntu 18.04
Shell/Bash
0 vote269 views1 answer
Slidev
Shell/Bash
0 vote288 views1 answer
Rancher getting started
Shell/Bash