Fsl reg

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain \
 -interp nearestneighbour \
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm

Fsl reg

#!/bin/sh

# Some viewers (like MRIcron) do not handle anisotropic voxels well. 
# FSL can easily convert an image with anisotropic voxels into one 
# with isotropic voxels in the same space using -applyisoxfm

# reslice current image into 1mm isotropic
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 1 -out anat_CT_axial_1mm

# reslice current image into 0.5 mm isotropic voxels.
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 0.5 -out anat_CT_axial_0.5mm

Similar codes

4 votes282 views3 answers
Install netbeans 8.2 ubuntu 20.04
Shell/Bash
14 votes272 views3 answers
Sed replace with newline
Shell/Bash
0 vote251 views1 answer
No matching key exchange method found. Their offer: diffie-hellman-group1-sha1,diffie-hellman-group14-sha1
Shell/Bash
72 votes282 views6 answers
See remote git
Shell/Bash
0 vote262 views1 answer
Linux strip executable
Shell/Bash
1 vote326 views2 answers
Copy local docker image to kind cluster
Shell/Bash
0 vote266 views1 answer
Bash merge pdf
Shell/Bash
0 vote266 views1 answer
Install neo layout
Shell/Bash
20 votes268 views3 answers
Bash check if variable is empty
Shell/Bash
11 votes256 views1 answer
Git from command line
Shell/Bash