Fsl reg

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain \
 -interp nearestneighbour \
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm

Fsl reg

#!/bin/sh

# Some viewers (like MRIcron) do not handle anisotropic voxels well. 
# FSL can easily convert an image with anisotropic voxels into one 
# with isotropic voxels in the same space using -applyisoxfm

# reslice current image into 1mm isotropic
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 1 -out anat_CT_axial_1mm

# reslice current image into 0.5 mm isotropic voxels.
flirt -in anat_CT_axial -ref anat_CT_axial -applyisoxfm 0.5 -out anat_CT_axial_0.5mm

Similar codes

0 vote248 views1 answer
How to install terraform macos
Shell/Bash
1 vote257 views1 answer
Makefile parameter
Shell/Bash
52 votes242 views6 answers
Scp remote to local
Shell/Bash
0 vote234 views1 answer
2FA git commands
Shell/Bash
-2 votes239 views1 answer
Install sinusbot docker
Shell/Bash
5 votes231 views2 answers
Shell script current time
Shell/Bash
11 votes235 views2 answers
Open current folder in terminal linux
Shell/Bash
24 votes248 views2 answers
Manjaro kill port 3000
Shell/Bash
0 vote243 views1 answer
How to show which kerne version is intalled on the system linux
Shell/Bash
0 vote242 views1 answer
Run shell script remotely using ssh
Shell/Bash